FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737809
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT14780.20032284778309833No Hit
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC13410.18175435647979354No Hit
GCTATTCCTAGTTTTATTGCTATAGCCATTATGATTATTAATGATGAGTAT11110.15058097691950087No Hit
GACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTATTAGTG10920.14800578469495493No Hit
CCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG10330.1400091351555755No Hit
CGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCC10060.13634965146806288No Hit
GTTAGATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTA9750.1321480220490669No Hit
GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGC9640.1306571212874877No Hit
ACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCC9570.12970836625739182No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT9500.12875961122729596No Hit
TCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAACCATAAC9330.12645549186849173No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT8350.1131729214471496No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA8250.11181755711844121No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGG8250.11181755711844121No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC7830.10612502693786603No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCT7800.10571841763925352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)