FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737809
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC14430.195579072632619No Hit
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT13910.18853117812333545No Hit
GCTATTCCTAGTTTTATTGCTATAGCCATTATGATTATTAATGATGAGTAT10890.1475991753963424No Hit
CCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG10780.1461082746347632No Hit
CGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCC10450.14163557235002555No Hit
ACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCC10170.1378405522296421No Hit
GTTAGATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTA9610.13025051198887516No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT9590.1299794391231335No Hit
GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGC9510.1288951476601668No Hit
GACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTATTAGTG9390.12726871046571675No Hit
TCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAACCATAAC9280.12577780970413752No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCT8580.11629025940317887No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA8350.1131729214471496No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT8210.11127541138695787No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC8150.11046219278973285No Hit
GGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCT8090.10964897419250783No Hit
CCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAGT7420.10056803319016168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)