FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences215015
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCT14860.6911145734018557No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA13460.6260028370113713No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCC8740.4064832686091668No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCTG8730.40601818477780616No Hit
GTTCTTCCGAGGGAATTCCCACTTTGGATCCTCGATGGTCACGCTGGCTTT8340.3878799153547427No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCTG7190.33439527474827335No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTGT7170.33346510708555216No Hit
CATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCGAGTCCTGACGATC6880.3199776759760947No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCTGT6320.29393298141990093No Hit
GAGTACATGGGGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACC6040.28091063414180406No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGGG5790.269283538357789No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCT5420.2520754365974467No Hit
CCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGC5420.2520754365974467No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGG5390.25068018510336487No Hit
GATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCC5210.24230867613887402No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGTCT4990.23207683184894076No Hit
GCGCAAAGCCAGCGTGACCATCGAGGATCCAAAGTGGGAATTCCCTCGGAA4960.23068158035485894No Hit
GAGTACATGGGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCA4890.22742599353533477No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTGTCT4830.22463549054717113No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGTC4710.2190544845708439No Hit
CCTTATGGTAAGTGGGTTTCCCCATTCAGACATCTCCGGATCACAGGATAT4660.21672906541404086No Hit
CACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGAT4520.21021789177499245No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCTGTC4510.20975280794363182No Hit
AGTTCTTCCGAGGGAATTCCCACTTTGGATCCTCGATGGTCACGCTGGCTT4480.20835755644955006No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCTGT4450.20696230495546825No Hit
CGTACGGGACGGAAGATCGTCAGGACTCGAGTAGGGCGGGACACGTGAAAT4360.20277655047322282No Hit
ACAGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGG4280.19905587982233797No Hit
GAGTACATGGGAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTGACCAT4120.19161453852056834No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCG3910.18184777806199567No Hit
GAGTACATGGGGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGG3510.16324442480757156No Hit
GGTACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATAC3510.16324442480757156No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGT3390.15766341883124432No Hit
GGTTTGTGCCCCCGGCCTTCACTTGCGTAAAAACCGGGCCTCCTTCTCGCG3330.15487291584308072No Hit
CCCCTCGTTCGCCTTGCAACACTATGTATTCATGTTGCAATACCTACCTTA3320.15440783201172012No Hit
GAGGAAAGGACATCAACGAGACTCCGTTAGTAGTGGCGAGCGAACGCGGAC3150.14650140687858987No Hit
ATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCGAGTCCTGACGATCT3120.14510615538450805No Hit
GCGCGATGGGTGACAGCCCCGTACGGGACGGAAGATCGTCAGGACTCGAGT2720.12650280213008394No Hit
GCAAATATCCTGTGATCCGGAGATGTCTGAATGGGGAAACCCACTTACCAT2690.12510755063600212No Hit
GAGTACATGGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAA2660.12371229914192032No Hit
CTTACCATAAGGTAGGTATTGCAACATGAATACATAGTGTTGCAAGGCGAA2640.12278213147919913No Hit
TCCACAAGACCGTACCCTAAACCGACACAGGTGGACTGGTAGAGAATACCA2630.12231704764783852No Hit
CCCATCGCGCCGGCCTTTCCAGACCGTTCCGGTAAAATCTCGTCAGGCACT2630.12231704764783852No Hit
ACCATAAGGTAGGTATTGCAACATGAATACATAGTGTTGCAAGGCGAACGA2610.12138687998511732No Hit
GCCGTTTACCGGGGCTTCAATTCAATGCTTGCACATCTCCTTTTAACCTTC2590.12045671232239612No Hit
GAGTACATGGGGGTTTGAAGCGAACCCGGGGAACTGAAACATCTCAGTACC2490.1158058740087901No Hit
GCGTGACCATCGAGGATCCAAAGTGGGAATTCCCTCGGAAGAACCTGTCTC2460.11441062251470828No Hit
AATCTGAGCAGGGTAAGCCGGCCCCTAAGGCGAGGCCGAAAGGCGTAGTCG2460.11441062251470828No Hit
GTTCTTCCGAGGGAATTCCCACTTTGGATCCTCGATGGTCACGCCTGTCTC2390.11115503569518405No Hit
GCGACAAACAGGGTGAGAGACCCTGTCGCCGAAAGTCCAAGGGTTCCTGCT2380.11068995186382345No Hit
ATCGCGCCGGCCTTTCCAGACCGTTCCGGTAAAATCTCGTCAGGCACTGGC2350.10929470036974165No Hit
GAGTACATGGGGTCTTTCCGTCTAACCGCGGGAAGTCTGCATCTTCACAGA2350.10929470036974165No Hit
GCTCAGATTAGCTTTAAGCAGGAACCCTTGGACTTTCGGCGACAGGGTCTC2230.10371369439341441No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCCT2210.10278352673069321No Hit
CCCGTACGGGGCTGTCACCCATCGCGCCGGCCTTTCCAGACCGTTCCGGTA2200.1023184428993326No Hit
ACCGATTGGTATCATGCTGCACCAATCGAGGATCGGGTTTGACCGCTCGCC2180.10138827523661141No Hit
CCGTAAGTTCGCGAGAAGGAGGCCCGGTTTTTACGCAAGTGAAGGCCGGGG2170.10092319140525079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)