FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207603
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA14560.7013386126404725No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCT13290.6401641594774642No Hit
GTTCTTCCGAGGGAATTCCCACTTTGGATCCTCGATGGTCACGCTGGCTTT8400.4046184303695033No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCC8270.3983564784709277No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCTG7840.3776438683448698No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCTG7760.3737903594842078No Hit
CATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCGAGTCCTGACGATC6630.31935954682735795No Hit
CCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGC6230.30009200252404833No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCTGT6150.29623849366338634No Hit
GAGTACATGGGGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACC5950.2866047215117315No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCT5890.2837145898662351No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTGT5720.27552588353732843No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGGG5610.27022730885391827No Hit
GCGCAAAGCCAGCGTGACCATCGAGGATCCAAAGTGGGAATTCCCTCGGAA5330.2567400278416015No Hit
GATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCC5210.25095976455060864No Hit
GAGTACATGGGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCA5160.24855132151269493No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGG5020.2418076810065365No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCTGTC4870.2345823518927954No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGTCT4620.22254013670322684No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTGTCT4390.21146129872882377No Hit
AGTTCTTCCGAGGGAATTCCCACTTTGGATCCTCGATGGTCACGCTGGCTT4320.20808947847574458No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGTC4190.20182752657716893No Hit
CACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGAT4180.20134583796958616No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCTGT4180.20134583796958616No Hit
CGTACGGGACGGAAGATCGTCAGGACTCGAGTAGGGCGGGACACGTGAAAT4180.20134583796958616No Hit
CCTTATGGTAAGTGGGTTTCCCCATTCAGACATCTCCGGATCACAGGATAT4020.19363882024826232No Hit
GGTACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATAC3970.19123037721034858No Hit
GAGTACATGGGGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGG3910.18834024556485215No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCG3860.18593180252693844No Hit
ACAGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGG3710.1787064734131973No Hit
GAGTACATGGGAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTGACCAT3680.1772614075904491No Hit
CCCCTCGTTCGCCTTGCAACACTATGTATTCATGTTGCAATACCTACCTTA3290.15847555189472212No Hit
GCGCGATGGGTGACAGCCCCGTACGGGACGGAAGATCGTCAGGACTCGAGT3140.15125022278098102No Hit
GAGGAAAGGACATCAACGAGACTCCGTTAGTAGTGGCGAGCGAACGCGGAC3090.1488417797430673No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGT3070.14787840252790183No Hit
GGTTTGTGCCCCCGGCCTTCACTTGCGTAAAAACCGGGCCTCCTTCTCGCG3000.14450658227482263No Hit
GAGTACATGGGGTCTTTCCGTCTAACCGCGGGAAGTCTGCATCTTCACAGA2840.13679956455349876No Hit
TCCACAAGACCGTACCCTAAACCGACACAGGTGGACTGGTAGAGAATACCA2780.13390943290800228No Hit
CTTACCATAAGGTAGGTATTGCAACATGAATACATAGTGTTGCAAGGCGAA2730.1315009898700886No Hit
ACCATAAGGTAGGTATTGCAACATGAATACATAGTGTTGCAAGGCGAACGA2700.13005592404734034No Hit
ATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCGAGTCCTGACGATCT2680.12909254683217486No Hit
GAGTACATGGGGGTTTGAAGCGAACCCGGGGAACTGAAACATCTCAGTACC2680.12909254683217486No Hit
GCCGTTTACCGGGGCTTCAATTCAATGCTTGCACATCTCCTTTTAACCTTC2650.12764748100942666No Hit
GCAAATATCCTGTGATCCGGAGATGTCTGAATGGGGAAACCCACTTACCAT2580.12427566075634747No Hit
GAGTACATGGGTGGTTTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTG2480.11945877468052003No Hit
ACTGAGATGTTTCACTTCCCCTCGTTCGCCTTGCAACACTATGTATTCATG2430.11705033164260631No Hit
AATCTGAGCAGGGTAAGCCGGCCCCTAAGGCGAGGCCGAAAGGCGTAGTCG2420.1165686430350236No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCCT2270.10934331392128244No Hit
CCCATCGCGCCGGCCTTTCCAGACCGTTCCGGTAAAATCTCGTCAGGCACT2250.10837993670611698No Hit
GTTCTTCCGAGGGAATTCCCACTTTGGATCCTCGATGGTCACGCCTGTCTC2230.10741655949095148No Hit
ATCGCGCCGGCCTTTCCAGACCGTTCCGGTAAAATCTCGTCAGGCACTGGC2220.10693487088336874No Hit
GCGTGACCATCGAGGATCCAAAGTGGGAATTCCCTCGGAAGAACCTGTCTC2210.106453182275786No Hit
ACCGATTGGTATCATGCTGCACCAATCGAGGATCGGGTTTGACCGCTCGCC2170.10452642784545502No Hit
GCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCC2140.1030813620227068No Hit
GAGTACATGGGGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAA2130.10259967341512406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)