FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1647148
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATTAAGACTCGCTTTCGCTACGGCTCCGCTTTTTCGGCTTAACCTTGC30150.18304366092178723No Hit
GCTTCTTCACAGGTATCTTAATTTCACCGAGTCTATCGTTGAGACAGTACT29620.17982597799347722No Hit
TCAGTTCAGGATCCTGAGTACGGCGACACACGTGAAACGTCGTCGGAATCT26380.16015561443173293No Hit
CCCATTAACGGGCTCTGACTGCTTGTAGGCACATGGTTTCAGGAACTATTT26150.15875926146284366No Hit
CCTAGTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGCACCC23020.1397567188862203No Hit
CAGTTCAGGATCCTGAGTACGGCGACACACGTGAAACGTCGTCGGAATCTG22890.13896747590380465No Hit
CCCCGGAAGGGGAGTGAAATAGTTCCTGAAACCATGTGCCTACAAGCAGTC22700.13781396692950482No Hit
GTTAATGGGTGATGGCGTGCCTCTTGTAGAATGAACCGGCGAGTTACAGTT20480.12433612522979112No Hit
CCTGAACTGAGGGTATTCGATTTCGTTTACGAGACTATCACTCTCTTTGGT19640.11923640134341297No Hit
GGTAGATCACCTGGTTTCGGGTCTACGGCAACATACTATGGCGCCCTATTA19040.11559374142457145No Hit
CCTTCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGT17540.1064870916274676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)