FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378365
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGCAGGAGGAGGCAGAGCACAGCATCGTCGGGACCAGACTCGTCTCAGG7800.2061501460230201No Hit
GCATATCTTCATGGCTGTGAAATTCATGGCTGTGGAATTCACGGCTGACTT6910.1826278857716755No Hit
CCTTACTTTTGGGGTCTACAACCAGCATATCTTCATGGCTGTGAAATTCAT6200.16386293658240061No Hit
TGTAGCAAAGGGGTCAAGATTGTAGCAAAAAACAAAAAATCCTGGATTTTA5190.13716913562300953No Hit
CCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCTGGAAGGCGT4210.11126821984063008No Hit
TCCAAGTAAGTCCAACGAAAGCCATGACCACATGGATGATATGGATGATGA4110.10862526925059135No Hit
ACTGGATGTCAGGTCTGCGAAACTTCTTAGATTTTGACCTCAGTCCATAAA3960.10466084336553329No Hit
GACATCCAGTACCCTGATGCTACAGACGAGGACATCACCTCACACATGGAA3950.10439654830652942No Hit
GCTGAAGATGAGTGGGGTAAAACCCCAGACGCCATGAAAGCTGCCATGGCC3860.10201789277549456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)