FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502374
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAA17800.35431769956247733No Hit
GTTCTAAGTTGGTCGTTAAGCGCACGCCGGACGGCCGAAGCCTGCCAAGGG10320.20542464379127903No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9720.1934813505476No Hit
CGGATCAGGTAGGAGTTACCCGCTGAACTTAAGCATATCAATAAGCGGAGG9300.1851210452770247No Hit
CCTGCTCCAGGGGCTTCCCCCCAAGGCCCAACGTGCCCGACCCTTAGAGCC8650.17218247759637242No Hit
GTTAATATTCCGGCACCTGGATGTGGATTCTCCACGGCAACGTAACTGAAC8430.16780327007369011No Hit
GCCTACTCGTCGGGGCATCGTTTCTACCCCGACGGCGAGGTATGGGTAGCA8030.1598410745779041No Hit
GAATATTAACCGGCTTCCCTTTCGACGGACGGCGCACGAGGGCGCACTTTC7580.15088360464514486No Hit
CCACCAGAGTTTCCTCTGGCTTCGCCCTATTCAGGCATAGTTCACCATCTT7110.14152802493759628No Hit
GCTACCAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAATTTGACGAT6970.1387412565140712No Hit
GCTCTAAGCGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCGGAGACC6630.1319733903426531No Hit
GACATCGGCGGGGGTCCTGGGAAGAGTTCTCTTTTCTTCTTGACAGCCTAT6200.12341403018468312No Hit
CCAATTGTTCCTCGTTAAGGGATTTAGATTGTTCTCATTCCAATTACAAGA6180.12301592040989383No Hit
GACGAGTAGGCAGGCGTGGGGGTCCGTGACGAAGCCTTGGGAGTGATCCCG6170.12281686552249917No Hit
CTAATCATTCGCTTTACCTCATAAAACTGATGTCGTTACTGCTATCCTGAG6100.12142348131073662No Hit
CCTAAGACATAGGGTAGTTCCGTTTGAAAGTGCGCCCTCGTGCGCCGTCCG5940.11823860311242222No Hit
GCCGATGTCTCCGCGTTCAGTTACGTTGCCGTGGAGAATCCACATCCAGGT5920.11784049333763293No Hit
GCTTAGAGCTGCATTCCCAAACAACTCGACTCGTCGAAGGAGCTTCACACG5750.11445656025192387No Hit
GCACTAGGGGCCGTTCGACCCGGGATCACTCCCAAGGCTTCGTCACGGACC5710.11366034070234526No Hit
CCTCGGGGTCCGAGTTGTAATTTGCAGAGGATGCTTCGGGTGCGGTCCCCA5690.11326223092755595No Hit
TCTGGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGTAACGACAT5480.1090820782922683No Hit
CCTAGTGCAGATCTTGGTGGTAGTAGCAAATACTCAAATGAGAACTTTGAG5410.10768869408050576No Hit
CTTTCTGGCTATCACAATGCTATGTTTTAATTAGACAGTCAGATTCCCCTT5380.10709152941832181No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5360.10669341964353252No Hit
GCACGTGTGCCGGTGTACTCCTCTCCGGGCGGGCCAGCATCGGTTTGGGCG5290.10530003543176997No Hit
CCATGTGAACAGCAGTTGGACATGGGTGAGTCGATCCTAAGACATAGGGTA5130.10211515723345554No Hit
ACTACATGGATACCTGTGGTAATTCTAGAGCTAATACATGCGCAAAACCCC5030.10012460835950907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)