FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences605095
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA10009716.54236111684942No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA406806.722911278394301No Hit
CACCAAGTGCCAACTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA91091.505383452185194No Hit
CACCAAGTGCCATCTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA83371.3778001801370032No Hit
AACTGGTCGGCTTCAAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGA39560.6537816375940968No Hit
AACTGGTCGGCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCACGAGA37520.6200679232186681No Hit
GTGCTGCTGAAAACCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCAC24400.40324246605904857No Hit
CACCAAGTGCCATCTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG20750.3429213594559532No Hit
NACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA18560.306728695494096No Hit
GTGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATC14740.2435981126930482No Hit
TCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGAGA14670.2424412695527149No Hit
GCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCA14150.2338475776530958No Hit
TCGCAGTAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGAGAG13470.22260967286128627No Hit
CACCAAGTGCCATCTGGTCTGTCTCTTATACACATCTCCGAGCCCACGAGA12400.2049264991447624No Hit
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCC12090.1998033366661433No Hit
CACCAAGTGCCATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAG11700.19335806774142902No Hit
ACCTCCCCAACGCCATGAATGCGGCCGAGATCACAGACAAGCTGGGGCTGC10900.1801370032804766No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCATCTGGTAGCTGCTGT10210.16873383518290516No Hit
CACCAAGTGCCATCTGGTAGCTACTGTCTCTTATACACATCTCCGAGCCCA9320.1540254009700956No Hit
CACCAAGTGCCAACTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG7620.12593063899057172No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC7250.11981589667738124No Hit
NACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA7180.1186590535370479No Hit
CACCAAGTGCCAACTGGTAGCTACTGTCTCTTATACACATCTCCGAGCCCA7170.11849379023128599No Hit
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCT6770.1118832580008098No Hit
CACCAAGTGCCATCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC6220.102793776183905No Hit
GCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCA6160.10180219634933357No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)