FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences688519
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA7060110.254038014927692No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA296624.308087358518792No Hit
CACCAAGTGCCAACTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA61700.8961263233113392No Hit
CACCAAGTGCCATCTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA53330.7745610506028155No Hit
CACCAAGTGCCATCTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG45530.6612744165375247No Hit
CACCAAGTGCCATCTGGTCTGTCTCTTATACACATCTCCGAGCCCACGAGA29800.4328130378391882No Hit
AACTGGTCGGCTTCAAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGA29470.42802014178257974No Hit
CACCAAGTGCCATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTC29220.42438915992151266No Hit
TCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTCT28890.4195962638649043No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCATCTGGTAGCTGCTGT28250.4103009503005727No Hit
AACTGGTCGGCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCACGAGA27390.39781037269850217No Hit
GCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCT25580.37152206402437693No Hit
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCT19800.2875737633965076No Hit
GTGCTGCTGAAAACCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCAC16650.24182339194706318No Hit
CACCAAGTGCCAACTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG16540.2402257599281937No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCAACTGGTAGCTGCTGT13950.2026087878475394No Hit
CACCAAGTGCCATCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC12690.1843086392677617No Hit
GCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCT12650.18372768216999097No Hit
NACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA12460.18096813595558No Hit
GTGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTCTACATC12410.18024193958336662No Hit
AGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGA10800.15685841639809503No Hit
TCGCAGTAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTCTA9440.13710587507389047No Hit
GTTCTAAGTTGGTCGTTAAGCGCACGCCGGACGGCCGAAGCCTGCCAAGGG8460.12287242617850778No Hit
ACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTCT8080.11735333374968593No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCT7720.11212471986974941No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)