FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574488
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA9355016.284065115372297No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA372196.47863837016613No Hit
CACCAAGTGCCAACTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA83191.4480720223921126No Hit
CACCAAGTGCCATCTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA70091.2200428903649858No Hit
AACTGGTCGGCTTCAAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGA36960.6433554747879852No Hit
AACTGGTCGGCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCACGAGA32840.5716394424252552No Hit
CACCAAGTGCCATCTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG26590.4628469176031528No Hit
GTGCTGCTGAAAACCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCAC23650.4116709139268357No Hit
GCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGT19890.3462213309938589No Hit
CACCAAGTGCCATCTGGTCTGTCTCTTATACACATCTCCGAGCCCACGAGA18610.3239406219102923No Hit
TCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAG18330.3190667167982621No Hit
NACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA16620.2893010820069349No Hit
CACCAAGTGCCATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTA15380.26771664508222975No Hit
GTTCTAAGTTGGTCGTTAAGCGCACGCCGGACGGCCGAAGCCTGCCAAGGG14760.2569244266198772No Hit
GTGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATC14040.24439152776037096No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCATCTGGTAGCTGCTGT13830.24073609892634834No Hit
TCGCAGTAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGG9370.163101753213296No Hit
CACCAAGTGCCAACTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG9280.16153514085585774No Hit
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCT8530.14848003787720543No Hit
GCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGT7670.13351018646168414No Hit
CACCAAGTGCCATCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC7650.13316205038225343No Hit
CACCAAGTGCCATCTGGTAGCTACTGTCTCTTATACACATCTCCGAGCCCA6710.11679965464900921No Hit
NACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA6650.11575524641071702No Hit
AGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGA6430.11192574953697901No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCAACTGGTAGCTGCTGT6410.11157761345754828No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC5850.1018298032334879No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)