FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516227
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA6265412.136908763005422No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA259755.031701170221627No Hit
CACCAAGTGCCAACTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA57001.104165415602051No Hit
CACCAAGTGCCATCTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA49380.9565559337268295No Hit
CACCAAGTGCCATCTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG36690.7107338438322677No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCATCTGGTAGCTGCTGT29070.5631243619570461No Hit
AACTGGTCGGCTTCAAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGA26710.5174080394865049No Hit
AACTGGTCGGCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCACGAGA24980.4838956505568287No Hit
TCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGGCA23150.4484461293190786No Hit
CACCAAGTGCCATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAG23110.4476712763958491No Hit
GCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTA22840.44244101916405No Hit
CACCAAGTGCCATCTGGTCTGTCTCTTATACACATCTCCGAGCCCACGAGA22470.4352736296241769No Hit
GTGCTGCTGAAAACCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCAC16910.3275690732952751No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCAACTGGTAGCTGCTGT13350.2586071631278488No Hit
CACCAAGTGCCAACTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG12960.2510523471263611No Hit
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCT12920.25027749420313156No Hit
GTGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATC12250.23729870773903727No Hit
NACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA11020.2134719803497299No Hit
GCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTA10700.2072731569638938No Hit
CACCAAGTGCCATCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC9740.18867668680638555No Hit
TCGCAGTAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGGCAT9590.1857709883442749No Hit
GTTCTAAGTTGGTCGTTAAGCGCACGCCGGACGGCCGAAGCCTGCCAAGGG9140.1770538929579429No Hit
AGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGA8420.16310654033981176No Hit
ACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGGCA5760.11157882094504938No Hit
CACCAAGTGCCAACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAG5340.10344286525113952No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCT5230.10131201971225837No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)