FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007547637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences901799
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA9521510.558339496938897No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA393154.359618939475427No Hit
CACCAAGTGCCATCTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA123371.3680432114029846No Hit
CACCAAGTGCCAACTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCCA105301.1676659654756771No Hit
CACCAAGTGCCATCTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG58050.643713288659668No Hit
AACTGGTCGGCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCACGAGA36420.4038593966061173No Hit
TCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAG35970.39886937111263154No Hit
CACCAAGTGCCATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTA34940.3874477572053196No Hit
GTGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATC33530.37181234399239743No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCATCTGGTAGCTGCTGT32430.35961450389720995No Hit
TCGCAGTAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGG31280.34686221652496846No Hit
AACTGGTCGGCTTCAAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGA28250.31326271153549734No Hit
CACCAAGTGCCATCTGGTCTGTCTCTTATACACATCTCCGAGCCCACGAGA23110.25626553145434844No Hit
CACCAAGTGCCAACTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCACG21670.2402974498751939No Hit
GTGCTGCTGAAAACCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCAC20420.2264362679488445No Hit
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCT20340.2255491523055581No Hit
GCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGT19760.21911756389173198No Hit
CACCAAGTGCCATCTGGTAGCTACTGTCTCTTATACACATCTCCGAGCCCA16740.1856289483576717No Hit
GCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGT15890.1762033446477541No Hit
NACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA14640.16234216272140467No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCAACTGGTAGCTGCTGT14150.15690857940627567No Hit
AGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGA13440.1490354280721092No Hit
GTTCTAAGTTGGTCGTTAAGCGCACGCCGGACGGCCGAAGCCTGCCAAGGG13020.14437807094485577No Hit
CACCAAGTGCCATCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC11800.13084955738473875No Hit
CACCAAGTGCCAACTGGTAGCTACTGTCTCTTATACACATCTCCGAGCCCA9970.11055678704456313No Hit
ACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAG9870.1094478924904552No Hit
TCTAGAAGAGAGACGTTACTTTTTTCCGATGTGAATCTACTTCACTCGAAG9250.10257274625498586No Hit
CACCAAGTGCCAACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTA9070.10057673605759156No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)