FastQCFastQC Report
Wed 8 May 2024
EGAF00007547641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007547641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences648770
Total Bases33 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCC11017316.981827149837383No Hit
CACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCC482027.429751683955793No Hit
CACCAAGTGCCAACTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCC105351.623842039551767No Hit
CACCAAGTGCCATCTGGTAGCTCCTGTCTCTTATACACATCTCCGAGCCC97331.500223499853569No Hit
CACCAAGTGCCATCTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCAC44870.6916164434237095No Hit
AACTGGTCGGCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCACGAG42000.6473788862000401No Hit
AACTGGTCGGCTTCAAAGCTGTCTCTTATACACATCTCCGAGCCCACGAG40840.6294988979145152No Hit
TCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTG29530.45516901213064725No Hit
GCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACT27830.4289655810225504No Hit
GTGCTGCTGAAAACCTTCAACGCTGTCTCTTATACACATCTCCGAGCCCA27550.4246497217812168No Hit
CACCAAGTGCCATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTC27030.4166345546187401No Hit
CACCAAGTGCCATCTGGTCTGTCTCTTATACACATCTCCGAGCCCACGAG25160.3878107803998335No Hit
GTTCTAAGTTGGTCGTTAAGCGCACGCCGGACGGCCGAAGCCTGCCAAGG24580.37887078625707105No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCATCTGGTAGCTGCTG23480.36191562495183194No Hit
GTGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCAT23400.3606825223114509No Hit
TCGCAGTAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGA22760.35081770118840266No Hit
NACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCC19330.29794842548206607No Hit
CACCAAGTGCCAACTGGTAGCCTGTCTCTTATACACATCTCCGAGCCCAC16210.24985742250720594No Hit
GCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACT13420.20685296792391758No Hit
CACCAAGTGCCATCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGA11900.18342401775667802No Hit
CACCAAGTGCCATCTGGTAGCTACTGTCTCTTATACACATCTCCGAGCCC11850.18265332860643987No Hit
GCGTCAGATGTGTATAAGAGACAGCACCAAGTGCCAACTGGTAGCTGCTG11240.17325092097353453No Hit
AGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAG10560.1627695485302958No Hit
CACCAAGTGCCAACTGGTAGCTACTGTCTCTTATACACATCTCCGAGCCC9210.14196094147386593No Hit
CTTTCTGGCTATCACAATGCTATGTTTTAATTAGACAGTCAGATTCCCCT8560.13194198252077005No Hit
ACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTG8460.1304006042202938No Hit
NACCAAGTGCCAACTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCC8270.12747198544938884No Hit
CTGGAGCAGGTGGGCACTAGCCGGGCAACCGGCCGGCGCCCGCCAGCATC8180.1260847449789602No Hit
CCGTAACTTCGGGATAAGGATTGGCTCTAAGGGTCGGGCACGTTGGGCCT7390.11390785640519752No Hit
CACCAAGTGCCAACTGGTCTGTCTCTTATACACATCTCCGAGCCCACGAG6720.10358062179200642No Hit
CCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCAC6580.10142269217133962No Hit

[FAIL]Adapter Content

Adapter graph