FastQCFastQC Report
Sat 25 May 2024
EGAF00007613090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007613090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208496792
Total Bases16.2 Gbp
Sequences flagged as poor quality0
Sequence length8-101
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGANNNNN17477850.8382790848887498No Hit
AGNNNNNN12885370.6180128661164245No Hit
TGTTTTTTTGATTTAGGAAGAGCA6072450.29124908550151696No Hit
GTTTTTTTGATTTAGGAAGAGC5533030.2653772246049714No Hit
ATTTTTTTGATTTAGGAAGAGT3003750.1440669648288881No Hit
TTTTTTTGATTTAGGAAGAG2501090.11995820060387308No Hit
TAGANNNN2364410.11340270405695259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)