FastQCFastQC Report
Sat 25 May 2024
EGAF00007613152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007613152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200733687
Total Bases14.7 Gbp
Sequences flagged as poor quality0
Sequence length8-101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGANNNNN34139091.700715535604146No Hit
AGNNNNNN28863361.4378931823237022No Hit
ANNNNNNN7443950.3708371081730791No Hit
TGTTTTTTTGATTTGGAAGAGCA2956650.1472921682547484No Hit
TAGANNNN2921400.1455361102394338No Hit
GTTTTTTTGATTTGGAAGAGC2909580.14494727036025598No Hit
TAGNNNNN2238970.11153932523542996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)