FastQCFastQC Report
Wed 8 May 2024
EGAF00007628804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007628804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1090117
Total Bases110.1 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC77

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC25380.23281904602900422No Hit
TCTTTCTCTCCCCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC19390.17787081570143387No Hit
TCTTTCTCTCCTCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC15390.14117750663460896No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)