FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007645372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007645372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49771439
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCATCTCTCAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGA687380.13810731893847797No Hit
GCCTCACTAAACCATCCAATCGGTAGTAGCGACGGGCGGTGTGTACAAAG615020.12356886044624911No Hit
GTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCT581910.11691645081830969No Hit
GTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACT542060.1089098508885789No Hit
GTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGC519130.10430279100429465No Hit
CCCATCTCTCAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGAA518330.10414205625037282No Hit
CCTCACTAAACCATCCAATCGGTAGTAGCGACGGGCGGTGTGTACAAAGG500680.10059584574197261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)