FastQCFastQC Report
Thu 16 May 2024
EGAF00007645372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007645372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49771439
Total Bases7.1 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCATCTCTCAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGA687510.13813343833599026No Hit
GCCTCACTAAACCATCCAATCGGTAGTAGCGACGGGCGGTGTGTACAAAG615030.12357086963067312No Hit
GTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCT582020.11693855184697391No Hit
GTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACT542070.10891186007300291No Hit
GTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGC519160.10430881855756673No Hit
CCCATCTCTCAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGAA518360.1041480838036449No Hit
CCTCACTAAACCATCCAATCGGTAGTAGCGACGGGCGGTGTGTACAAAGG500740.10060790084851677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)