FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007645410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007645410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences213872438
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGTATAGGTCAGTACGTACGAGTCATCTAGGTTGTACTCGCAGTAGTC6129920.28661570688224913No Hit
TGCCAGACGGTCAGTACGTACGAGTCCCTCGACCTGTACTCGCAGTAGTC5249110.24543181202245426No Hit
CGCTTGTAGGTCAGTACGTACGAGTCGTGCGTTCCGTACTCGCAGTAGTC3780670.17677219352593718No Hit
AGCACCGTGGTCAGTACGTACGAGTCAGAATCAGAGTACTCGCAGTAGTC3437410.16072243960673419No Hit
TGGACTGCCGTCAGTACGTACGAGTCGACCAGAGAGTACTCGCAGTAGTC3169720.14820610031106488No Hit
GCGCTCTATGTCAGTACGTACGAGTCCCACGAAGGGTACTCGCAGTAGTC3138450.14674401383127264No Hit
ACATCGTCCGTCAGTACGTACGAGTCGACATATGTGTACTCGCAGTAGTC2949320.1379008921196288No Hit
AAGCTGAGGGTCAGTACGTACGAGTCCTTCGACTGGTACTCGCAGTAGTC2725840.1274516728518333No Hit
ATAATCGAGGTCAGTACGTACGAGTCATCTTACAGGTACTCGCAGTAGTC2716890.12703319910721736No Hit
TACCTCACTGTCAGTACGTACGAGTCCTGATCCGAGTACTCGCAGTAGTC2615560.12229532820867736No Hit
CGGACAAGTGTCAGTACGTACGAGTCGACCAGAGAGTACTCGCAGTAGTC2573650.1203357489196434No Hit
ATCAGTCGAGTCAGTACGTACGAGTCCCGGTTGAGGTACTCGCAGTAGTC2324350.10867926796626314No Hit
AGCCGGATCGTCAGTACGTACGAGTCGTCAATACAGTACTCGCAGTAGTC2317550.10836132143404098No Hit
GCGAACTCGTCAGTACGTACGAGTCCCTTCCTCAGTACTCGCAGTAGTCG2233080.10441177090804005No Hit
GAACTATGGGTCAGTACGTACGAGTCTTCCTCGGTGTACTCGCAGTAGTC2210770.10336862574129352No Hit
AATAACTCCGTCAGTACGTACGAGTCTTACGCTCGGTACTCGCAGTAGTC2203750.10304039270361709No Hit
AGATGAAGAGTCAGTACGTACGAGTCTGCAACTCTGTACTCGCAGTAGTC2175110.10170127672084608No Hit
GTAGCTACAGTCAGTACGTACGAGTCAGATACGTTGTACTCGCAGTAGTC2147390.10040517703361104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)