FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007661181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007661181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8389483
Sequences flagged as poor quality0
Sequence length89-101
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA673220.8024570763180521No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT404100.4816744965094989No Hit
CGTGTGGTGTGCGTCGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGTGTGG313050.37314575880301565No Hit
CGCGTGTGGTGTGCGTCGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGTGT301580.35947387937969477No Hit
CACCACACGCGCGCGCGCGCGCGCCGCCCCCGCCGCTCCCGTCCACTCTC238000.2836885181124987No Hit
CCACACGCGCGCGCGCGCGCGCCGCCCCCGCCGCTCCCGTCCACTCTCGA218770.26076696263643423No Hit
GGTCGGGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGG205870.2453905681673114No Hit
GGTCGGGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGGAC150490.17937934912079803No Hit
GGTCGGGGCGGCGGCGGCGGCGGTGGCGGCGGCGTCGGCGGCGGCGGGAC130680.15576645187790475No Hit
GTGTTATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTA128060.15264349424154028No Hit
GCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCGAGAGTGG115910.13816107619504087No Hit
GGTCTCGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGG114750.1367783926613833No Hit
GGCCCATACCCGGCCGTCGCCGGCAGTCGAGAGTGGACGGGAGCGGCGGG105450.12569308502085288No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA102520.12220061712980407No Hit
GTCCAGCCGCGGCGCGCGCCCAGCCCCGCTTCGCGCCCCAGCCCGACCGA100550.11985243905971321No Hit
GCCCCGACCCGCGCGCCCTCCCGAGGGAGGACGCGGGGCCGGGGGGCGGA92260.10997101966831568No Hit
CGCGCGCGCCGCCCCCGCCGCTCCCGTCCACTCTCGACTGCCGGCGACGG90320.10765860065512975No Hit
CCCCACACCCCCGCCGCCGCCGCCGCCGCCGCCCTCCGACGCACACCACA86200.10274769017351844No Hit
GGTCGGGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGTCGGCGGCGG85840.10231858149065919No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)