FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007661391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007661391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11398326
Sequences flagged as poor quality0
Sequence length80-101
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA307780.27002210675497434No Hit
GGTCGGGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGG238260.20903069450724604No Hit
GTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAG236340.20734623663158958No Hit
GTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTA232190.20370535111910293No Hit
CCATAGGGTCTTCTCGTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAG231950.20349479388464586No Hit
CTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACC163160.1431438265583911No Hit
CGCGTGTGGTGTGCGTCGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGTGT146350.12839604692829457No Hit
GTTTAGGACCTGTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAG125200.10984069064176617No Hit
GTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGT120710.10590151571379869No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)