FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007661392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007661392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11398326
Sequences flagged as poor quality0
Sequence length88-101
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA309840.2718293896840641No Hit
GTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAG236970.20789894937203937No Hit
GTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTA226000.19827472911373126No Hit
CCATAGGGTCTTCTCGTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAG222620.19530938139512768No Hit
GGTCGGGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGG183410.16090959321570553No Hit
CTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACC155770.13666041838073414No Hit
GTTTAGGACCTGTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAG133370.11700840983140859No Hit
CGCGTGTGGTGTGCGTCGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGTGT125230.10986701029607329No Hit
GTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGT121190.10632263018271279No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)