FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007680859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007680859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences300825555
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGAGTGTGTCAGTACGTACGAGTCCCTAGCAATGTACTCGCAGTAGTC6070360.20179003741886223No Hit
GTCAATACAGTCAGTACGTACGAGTCGCACGTAGAGTACTCGCAGTAGTC5507870.18309182542686575No Hit
GGTTAGATGGTCAGTACGTACGAGTCCGGAATGCAGTACTCGCAGTAGTC4214310.1400914892353477No Hit
CCGACTGTTGTCAGTACGTACGAGTCGTGGACTGGGTACTCGCAGTAGTC3828410.1272634567232827No Hit
CATTCGAATGTCAGTACGTACGAGTCATCGTAGTGGTACTCGCAGTAGTC3233150.10747590908624768No Hit
AGCCTCGCAGTCAGTACGTACGAGTCCTGAGTAGCGTACTCGCAGTAGTC3162380.10512338288547328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)