FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007680861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007680861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences309597930
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATATCGCGTCAGTACGTACGAGTCCGTGTCCGAGTACTCGCAGTAGTC7876490.2544102927303164No Hit
CGGAATGCAGTCAGTACGTACGAGTCGGTGGAGCTGTACTCGCAGTAGTC5438090.17565007621336484No Hit
CAGTATGATGTCAGTACGTACGAGTCCTGGTCGGTGTACTCGCAGTAGTC5054340.1632549674992982No Hit
GTGTACCGTGTCAGTACGTACGAGTCCGTGTGTGGGTACTCGCAGTAGTC4536070.14651486849411427No Hit
ACCACGGATGTCAGTACGTACGAGTCGACGTTCAGGTACTCGCAGTAGTC3890010.12564715791219921No Hit
TCCTCGTCGGTCAGTACGTACGAGTCTTACTAGTCGTACTCGCAGTAGTC3602780.11636964110192856No Hit
ATCTGGTAGGTCAGTACGTACGAGTCTCCGTATACGTACTCGCAGTAGTC3283840.10606789263739587No Hit
GAAGGATCAGTCAGTACGTACGAGTCCTTGCGACCGTACTCGCAGTAGTC3196670.10325230533679602No Hit
TGATGTGTGGTCAGTACGTACGAGTCAGCATTCCAGTACTCGCAGTAGTC3175300.10256205524371562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)