FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007680877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007680877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145297681
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGCGACGTCAGTACGTACGAGTCCACATTCTGGTACTCGCAGTAGTC2115830.14562035577154187No Hit
CACAACGCTGTCAGTACGTACGAGTCTCCAGCTATGTACTCGCAGTAGTC2019090.13896230043754107No Hit
AATAACTCCGTCAGTACGTACGAGTCAGCATTGTTGTACTCGCAGTAGTC1982770.13646260465781282No Hit
GTCTTCTCGGTCAGTACGTACGAGTCATGCTGTCGGTACTCGCAGTAGTC1884370.12969030111361515No Hit
CGAGCTTACGTCAGTACGTACGAGTCTCCGATCTGGTACTCGCAGTAGTC1806350.12432063523436414No Hit
GTCGTTAGAGTCAGTACGTACGAGTCTCCTCTAGTGTACTCGCAGTAGTC1690730.11636317856993188No Hit
AACGCATTGGTCAGTACGTACGAGTCCTGGACACTGTACTCGCAGTAGTC1658470.1141429091356248No Hit
ACGTAGTATGTCAGTACGTACGAGTCCCTGCTCCAGTACTCGCAGTAGTC1633420.11241886234922083No Hit
CCATTACAGGTCAGTACGTACGAGTCGGTCCTAAGGTACTCGCAGTAGTC1573370.10828596775746202No Hit
ACTTGATCTGTCAGTACGTACGAGTCCACCAAGATGTACTCGCAGTAGTC1544310.10628593583678737No Hit
CCTAGAGTAGTCAGTACGTACGAGTCCCACTACCAGTACTCGCAGTAGTC1516580.10437744013271621No Hit
TTAACGTTCGTCAGTACGTACGAGTCCAGCTTACCGTACTCGCAGTAGTC1492020.10268711721558722No Hit
AGTCGCGACGTCAGTACGTACGAGTCCGCGAGTGTGTACTCGCAGTAGTC1473920.10144139877910371No Hit
CTATTCCGTGTCAGTACGTACGAGTCATACTTGCTGTACTCGCAGTAGTC1464010.10075935072907324No Hit
GGTCTTGCAGTCAGTACGTACGAGTCTCTTGGTAGGTACTCGCAGTAGTC1460450.10051433649515713No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)