FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007698526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311811554
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGGATATGGGTACGGCCCGGCGCG7124120.22847517702952086No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC7081860.22711987125403313No Hit
CGTTCGTTATCGGAATTAACCAGACAAA6969460.22351512991080502No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTT6389990.20493114889514324No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA6054340.19416663437686468No Hit
GGGGTCTGATGAGCGTCGGCATCGGGCG4353300.13961317161454512No Hit
CCTTTAAGTTTCAGCTTTGCAACCATAC4268740.1369012772374689No Hit
GATCGTCTTCGAACCTCCGACTTTCGTT4151720.1331483694795992No Hit
CCACCTACTAAGAACGGCCATGCACCAC3927800.12596710896736046No Hit
CGGGTGGCTGAACGCCACTTGTCCCTCT3767610.12082971114021003No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT3760980.1206170827140036No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA3552340.11392586177226774No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA3307070.10605989282873078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)