FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6681164
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG188115028.156021914744194No Hit
GTAGCACA156083923.361782467845423No Hit
TCCAATGC155769923.31478466925823No Hit
CGTTTGAT150999422.600762382123836No Hit
GGAGCACA754961.129982739534608No Hit
TGCAATGC98360.14721985570179089No Hit
CGGTTGAT85440.127881908002857No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)