FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4496074
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA123930.27564048100631794No Hit
CGGGTGGCTGAACGCCACTTGTCCCTCT81890.18213668191404325No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTT74200.16503287090025653No Hit
CCTTTAAGTTTCAGCTTTGCAACCATAC63040.14021121538480016No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC54690.12163945700181981No Hit
GATCGTCTTCGAACCTCCGACTTTCGTT50570.11247590675776244No Hit
CACCTTGTTACGACTTTTACTTCCTCTA47960.1066708421614057No Hit
CCACCTACTAAGAACGGCCATGCACCAC45820.1019111340249293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)