FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23304501
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA575530.24696087678513262No Hit
CCTTTAAGTTTCAGCTTTGCAACCATAC557710.23931428525330792No Hit
TGACTTTTACTTCCTCTAGATAGTCAAG431420.1851230369618298No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA401340.1722156591123749No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC371350.1593469004120706No Hit
CACCTTGTTACGACTTTTACTTCCTCTA338190.1451178894583497No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTT327720.14062519510715976No Hit
CCACCTACTAAGAACGGCCATGCACCAC315020.1351756040603487No Hit
CGGGTGGCTGAACGCCACTTGTCCCTCT304220.1305413061622731No Hit
CGACTTTTACTTCCTCTAGATAGTCAAG268580.11524812309862374No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCT268080.11503357227000913No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA259800.11148061054815118No Hit
ATTCCTTTAAGTTTCAGCTTTGCAACCA242040.10385976511576026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)