FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17948090
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT471406126.2649730416997No Hit
AAATGTGC462498225.76865839206289No Hit
CTCGCGTA429999523.957953186105037No Hit
TCTATCCG409129722.795166505182447No Hit
CTCCCGTA246260.13720680027791257No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)