FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3150794
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC102653832.58029563341812No Hit
ACGCGGGT81290125.799877745101714No Hit
TTTACATG65842520.897113552964743No Hit
GAATTCCA60534519.212458827838315Illumina Small RNA Adapter 2 (100% over 8bp)
CGGGATAC36480.1157803398127583No Hit
AAATTCCA32580.10340250743146014No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)