FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19030707
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGTA378308919.8788673484385No Hit
GAGCACCG360305318.93283838587815No Hit
TGCTGAGT354944718.651156785714793No Hit
ATAGTTAC280394214.733777363079575No Hit
CGTCCCGT15159857.965994116771384No Hit
ACAAGGTA12566786.60342256333409No Hit
GTGGTACC12310316.4686561565999625No Hit
TACTATAG7939084.171720998069068No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)