FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22843297
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG644217228.2015857868503No Hit
GCGTACAC592328225.930066049572442No Hit
CGACTTGA538012923.552331346915466No Hit
TACAGACT477627520.908868802957823No Hit
CGACTTAA288770.12641345073786853No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)