FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31990805
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG1043514832.619210426245914No Hit
GTATGCTC724221622.638430011373583No Hit
CGTGCAGA721148122.542355529971818No Hit
AACAAGAT632606619.77463836874377No Hit
AACCAGAT1706620.5334720398564525No Hit
AGTGCAGA973040.30416239916438487No Hit
TCGCTTCA591760.18497815231595455No Hit
GTATGCTA543950.17003323298679104No Hit
AACAAGAA522100.16320314540381212No Hit
AACACGAT431430.13486062635810508No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)