FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48276915
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGAGC612480512.686819362836255No Hit
TGCTCGTA610320012.642067124628822No Hit
ATGAATCT549067011.373282654867237No Hit
CTGCGGCT504427610.448629536497931No Hit
TCTGTTGG41127818.519146262763476No Hit
AGAAACTC35729047.400854010659132No Hit
GACTCAAA33168056.870374795075451No Hit
ATTGCGTG32042086.6371432391651375No Hit
GCGTACAC29471886.104756279476433No Hit
CGACTTGA26774535.546031679944752No Hit
GATCTCAG24872125.15196963186235No Hit
TACAGACT23766794.923013411275347No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)