FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35043510
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT987440828.177565546373636No Hit
TAGTGCGG932174826.60049749582733No Hit
ACACCTTC870738624.847356900036555No Hit
GGTATGCA657347218.758029660841622No Hit
CACGAAAT1330430.37965089684223985No Hit
TAGTGCGA715290.20411482753867977No Hit
ACACCTTA613650.17511088358443547No Hit
CTCGAAAA367650.10491243599742149No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)