FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007698606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107321815
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG104351489.723231013191493No Hit
CTCGAAAT98744089.200746372021383No Hit
TAGTGCGG93217488.68579048910047No Hit
CACCGCTC88563828.252173148581209No Hit
ACACCTTC87073868.113342101044415No Hit
TCGATACT86755908.083715319201414No Hit
AGATCTGG72440266.749816894170118No Hit
GTATGCTC72422166.748130377780138No Hit
CGTGCAGA72114816.719492211345848No Hit
GGTATGCA65734726.125010092309751No Hit
AACAAGAT63260665.894482869116591No Hit
GTTGAGAA44460764.142751406133041No Hit
ACCCTCCT27814812.5917200524422737No Hit
GTTGCAGC26415812.4613644485978923No Hit
CAATGGAG26015432.4240579606299053No Hit
TGGAATTA23360212.17665066510476No Hit
AACCAGAT1706620.15901892825796882No Hit
CACGAAAT1330430.12396640887968582No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)