FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33429337
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC796414623.823822769802465No Hit
TTAGCTCG746764122.33858541675535No Hit
GACCTATT649989819.44369402240912No Hit
ACTTAGGA557409716.6742672760755No Hit
CGTCCCGT15159854.53489400642316No Hit
ACAAGGTA12566783.7592070701252616No Hit
GTGGTACC12310313.6824870322734786No Hit
TACTATAG7939082.3748840726335674No Hit
GACCTATA453820.13575501063631623No Hit
TTAGCTCA415880.12440569790540566No Hit
ACTTAGAA415330.12424117175880575No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)