FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37012980
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT1290267434.85986267520205No Hit
TTGTTTCC1004037427.12662963101053No Hit
CCTAACAA677143918.294768483921047No Hit
GGAGGAGG671705818.147844350819632No Hit
CCCAACAA821400.2219221473115648RNA PCR Primer, Index 36 (100% over 8bp)
TTGTTTCA534660.14445202736985782No Hit
AACCCGTA529100.14294985164663856No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)