FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32744772
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGGCT1013231830.943315164936863No Hit
TCTGTTGG826468825.239717656302506No Hit
AGAAACTC717705421.918167578018256No Hit
GACTCAAA666298320.348234521223723No Hit
TCTGTTGA630930.192681140061076No Hit
AGAAACTA427490.13055213821614028No Hit
CTGCGGCA346900.10594057579634392No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)