FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007698621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28478881
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC796414627.965094555505885No Hit
TTAGCTCG746764126.221679847603564No Hit
GACCTATT649989822.823572316622975No Hit
ACTTAGGA557409719.57273883057414No Hit
GACCTATA453820.1593531712148381No Hit
TTAGCTCA415880.14603101856424766No Hit
ACTTAGAA415330.14583789299867506No Hit
NGGAGCAC332950.11691119464981786No Hit
TTCGCTCG326010.11447430114968352No Hit
CGGCGCAC322730.11332257050408687No Hit
NTAGCTCG313250.109993788028399No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)