FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007698788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113618341
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG5646180.49694265470748245TruSeq Adapter, Index 2 (97% over 36bp)
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1758410.15476462554579987No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1377380.12122866676956671No Hit
CCTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCG1190070.10474277211986399No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA1187420.10450953512866377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)