FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007698798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007698798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93110483
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG6785950.7288062290472707TruSeq Adapter, Index 7 (97% over 35bp)
CGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC1414350.15190018936965455No Hit
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC1163050.12491074716044594No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGG1158720.12444570822385272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)