FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96880304
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG3007120.3103953926486441TruSeq Adapter, Index 8 (97% over 35bp)
CGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC1467610.15148693175033803No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGG1168390.12060139695680558No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG1098030.11333882684761186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)