FastQCFastQC Report
Mon 13 May 2024
EGAF00007699297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89272542
Total Bases6.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC3360880.37647410107354173Illumina Single End PCR Primer 1 (96% over 33bp)
CGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCG1216100.13622329696851243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)