FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90806032
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG7402410.8151892376488822TruSeq Adapter, Index 1 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTAT1611330.17744746296149136TruSeq Adapter, Index 1 (97% over 36bp)
CTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAG1087630.11977508278304683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)