FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97126193
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG3928940.40451909815923703TruSeq Adapter, Index 7 (97% over 34bp)
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC1544380.15900757069722685No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1346520.13863613495074392No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA1035540.10661799541551063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)