FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87743824
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG4002240.4561278295780681TruSeq Adapter, Index 6 (97% over 35bp)
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA1551000.1767645777553529No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1485290.16927573158881246No Hit
CTCGGGATCCCACCTCGGCCGGCGAGCGCGCCGGCCTTCACCTTCATTGC974830.11109955727482312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)