FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78864240
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG9122521.156737198000006TruSeq Adapter, Index 6 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTAT1154430.1463819343215632TruSeq Adapter, Index 6 (97% over 36bp)
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC869350.11023373838383531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)