FastQCFastQC Report
Wed 15 May 2024
EGAF00007699606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98216079
Total Bases7.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG1587610.16164461218208476TruSeq Adapter, Index 13 (97% over 37bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT988680.10066376198952108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)