FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007699668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007699668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101147904
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG14170821.4009998664925374TruSeq Adapter, Index 2 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT2291750.22657414631152414TruSeq Adapter, Index 2 (97% over 37bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1401810.1385901184862911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)